Scalable quantitative maps

  • PyPI version
    pip install cooler
  • Install with bioconda
    conda install -c conda-forge -c bioconda cooler
  • License
  • Documentation

Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

Simple, sparse matrix data model

Fast, portable and efficient storage, powered by HDF5

Extensive command line interface, powered by Click

Flexible Python API, powered by NumPy, Pandas and h5py

Multiscale visualization, powered by HiGlass